Soy3D Atlas
Soybean Pangenome Protein 3D Structurome Atlas

Soybean Pangenome Protein 3D Structure Atlas

Comprehensive resource for exploring soybean protein structures and functional annotations

Atomic Accuracy

Soy3D Atlas predictions achieve atomic-level accuracy comparable to experimental methods.

Complete Coverage

Predictions for more than 200 million proteins across the tree of life.

Functional Insights

Explore potential functional insights derived from the predicted structures.

Open Access

Freely available to the global scientific community to accelerate research.

Understanding Proteins at Atomic Detail

Proteins are the machinery of life, performing countless vital functions in our bodies and in every living organism. Understanding their structure is key to understanding how they work and how we can intervene when things go wrong.

  • Explore predicted structures with interactive 3D visualization
  • Access quality metrics and confidence estimates for each prediction
  • Download structures in standard PDB format for further analysis
Learn about how we work
Protein structure visualization

Resources & Documentation

Explore our comprehensive resources to learn more about us and how to use the database.

License and Attribution

All of the data provided is freely available for both academic and commercial use under Creative Commons Attribution 4.0 (CC-BY 4.0) license terms.

Research Team of SeedLLM from Yazhou Bay National Laboratory, Shanghai Artificial Intelligence Laboratory, and China Agricultural University    Molecular Plant   SeedLLM·Rice: A large language model integrated with rice biological knowledge graph

The structures and data provided in this resource are predictions with varying levels of confidence and should be interpreted carefully. The information is for theoretical modelling only. It is not intended, validated or approved for any clinical use.