Soybean Pangenome Protein 3D Structure Atlas
Comprehensive resource for exploring soybean protein structures and functional annotations
Atomic Accuracy
Soy3D Atlas predictions achieve atomic-level accuracy comparable to experimental methods.
Complete Coverage
Predictions for more than 200 million proteins across the tree of life.
Functional Insights
Explore potential functional insights derived from the predicted structures.
Open Access
Freely available to the global scientific community to accelerate research.
Understanding Proteins at Atomic Detail
Proteins are the machinery of life, performing countless vital functions in our bodies and in every living organism. Understanding their structure is key to understanding how they work and how we can intervene when things go wrong.
- Explore predicted structures with interactive 3D visualization
- Access quality metrics and confidence estimates for each prediction
- Download structures in standard PDB format for further analysis

Resources & Documentation
Explore our comprehensive resources to learn more about us and how to use the database.
FAQs
Comprehensive guides on how to use our Structure Database.
Toolkits
Provides convenient tools for researchers and practitioners.
Downloads
Download predicted protein structures.
API Access
Programmatic access to our data for researchers and developers.
License and Attribution
Research Team of SeedLLM from Yazhou Bay National Laboratory, Shanghai Artificial Intelligence Laboratory, and China Agricultural University Molecular Plant SeedLLM·Rice: A large language model integrated with rice biological knowledge graph